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Home»#Newsapp»Distinct gut microbiome patterns found in 5 cancer groups and in early-onset cancers
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Distinct gut microbiome patterns found in 5 cancer groups and in early-onset cancers

studyblogBy studyblogSeptember 29, 2026No Comments5 Mins Read
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  • Cancer

    September 29, 2026

Ruben Mars, Ph.D., works within an anaerobic chamber in the Microbiomics Program laboratory at Mayo Clinic.

Study links gut bacteria to cancer survival, pretreatment signal tied to chemotherapy toxicity 

ROCHESTER, Minn. — Mayo Clinic researchers have discovered distinct gut microbiome patterns in adults age 50 or younger with colorectal and breast cancers compared with those diagnosed later in life — one of several findings from an analysis of stool samples from 1,364 patients with cancer across cancer types, stages and treatments.

Among younger patients, those with colorectal cancer had higher lactate levels and more Veillonella parvula, a gut bacterium that feeds on lactate. Early-onset breast cancer showed changes across 64 bacterial species and lower levels of primary bile acids.

Published in Cell, the findings come from the Mayo Clinic Cancer Microbiome cohort, a real-world study that recruited cancer patients at Mayo Clinic in Arizona, Florida and Minnesota, representing 40 states. Stool samples were collected before patients began a new treatment regimen and linked to detailed clinical data on side effects and outcomes. The samples provided a window into the gut microbiome — the trillions of microbes living in the digestive tract.

Veillonella bacteria illustration
Enterococcus bacteria illustration
Streptococcus bacteria illustration
Clostridium bacteria illustration
Actinomyces bacteria illustration
Lactobacillus bacteria illustration
Examples of gut bacteria linked to cancer-related microbiome patterns in the study include Veillonella, Lactobacillus, Enterococcus, Streptococcus, Actinomyces and Clostridium.

Cancer-specific microbiome patterns emerge

Researchers first compared patients with cancer with 287 people without cancer to identify broad microbiome differences. Comparisons across cancer types then revealed more specific signals. After accounting for other health conditions, researchers pinpointed 341 bacterial species associated with five cancer groups.

Among those groups, neuroendocrine tumors showed a broad loss of common, health-associated gut bacteria. Liver and intrahepatic bile duct cancers had higher levels of several bacteria, including Enterococcus faecalis, while esophageal cancer had higher levels of six species, including several Streptococcus bacteria. Distinct associations were also found in lymphoid leukemia and multiple myeloma and related plasma cell cancers.

“We can now narrow the search to those microbial changes that are most specific to individual cancers,” says Ruben Mars, Ph.D., a Mayo Clinic microbiome researcher and co-corresponding author. “Those are the signals we need to understand first if we want to determine whether the microbiome plays a causal role in cancer and ultimately develop targeted interventions.”

Distinct patterns in early-onset cancers 

The findings come as colorectal and breast cancer rates rise among younger adults. Colorectal cancer incidence is increasing about 3% a year among adults ages 20 to 49, while breast cancer incidence is rising 1.4% a year among women younger than 50, according to the American Cancer Society.

The colorectal finding raises questions about a possible biological connection: Tumors can produce high levels of lactate, which Veillonella parvula uses to grow. Whether that relationship plays a role in early-onset disease is not yet known.

In breast cancer, one of the 64 species that differed in younger patients was Clostridium scindens, a bacterium involved in bile acid and steroid metabolism.

No comparable age-related microbiome differences were found in brain cancer, the third cancer examined in the early-onset analysis. The colorectal and breast cancer findings do not establish that these microbial or metabolic differences cause early-onset disease, but they identify associations that warrant further study.

Gut microbiome linked to survival and treatment side effects 

Portrait of Dr. Purna Kashyap
Purna Kashyap, M.B.B.S.

Researchers also identified specific gut bacteria associated with survival in colorectal, liver and intrahepatic bile duct, melanoma, ovarian and prostate cancers. In liver and intrahepatic bile duct cancer, Bifidobacterium longum was associated with longer survival and Blautia A massiliensis with shorter survival.

Researchers also studied whether the gut microbiome before treatment was associated with diarrhea during chemotherapy, a side effect that can make treatment harder to tolerate. Among patients receiving 5-fluorouracil, or 5-FU, a chemotherapy used to treat many types of cancer, those who later developed diarrhea had lower levels of bacterial genes capable of breaking down the drug. Much of that function came from Anaerostipes hadrus, a common gut bacterium.

The same signal was not linked to diarrhea in patients receiving carboplatin, another chemotherapy drug, suggesting the finding was specific to 5-FU.

“The microbiome is not the sole driver of cancer or treatment outcomes, but it is an underappreciated component that has not traditionally been considered in therapeutic approaches,” says Purna Kashyap, M.B.B.S., senior author and director of the Mayo Clinic Microbiome Program. “This gives us a proof of concept that we can begin to understand why some patients experience a particular side effect and identify a target that could potentially be acted upon.”

Next, researchers will investigate whether cancer-specific microbial signals play a causal role in disease and validate the microbiome’s potential to predict treatment side effects in larger patient groups.

The research was supported in part by the National Institutes of Health and philanthropic gifts from the Valhalla Foundation, the Maxine & Jack Zarrow Family Foundation, and other benefactors to the Mayo Clinic Microbiome Program and Center for Individualized Medicine. For a complete list of authors, disclosures and funding, review the study. 

###  

About Mayo Clinic  
Mayo Clinic is a nonprofit organization committed to innovation in clinical practice, education and research, and providing compassion, expertise and answers to everyone who needs healing. Visit the Mayo Clinic News Network for additional Mayo Clinic news.  

Media contact:   

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